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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs10461617 1 rs252922 chr5:56136343 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs8135828 1 rs2530664 chr22:30038152 CABP7 chr22:30116344-30127818:+ 1.03 6.84 6.87E-9 Lipid traits
UVM cis rs8135828 1 rs2531848 chr22:30032484 CABP7 chr22:30116344-30127818:+ 1.03 6.84 6.87E-9 Lipid traits
UVM cis rs8135828 1 rs2531849 chr22:30037900 CABP7 chr22:30116344-30127818:+ 1.03 6.84 6.87E-9 Lipid traits
UVM cis rs10461617 1 rs2548664 chr5:56133555 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs10461617 1 rs2548665 chr5:56131805 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs2564921 1 rs2564921 chr3:53125585 RFT1 chr3:53122503-53164470:- 0.36 5.14 3.77E-6 Height
UVM cis rs2564921 1 rs2564940 chr3:53107569 RFT1 chr3:53122503-53164470:- -0.37 -5.39 1.5E-6 Height
UVM cis rs2564921 1 rs2581782 chr3:53122257 RFT1 chr3:53122503-53164470:- -0.36 -5.11 4.13E-6 Height
UVM cis rs2564921 1 rs2581783 chr3:53122258 RFT1 chr3:53122503-53164470:- -0.37 -5.23 2.68E-6 Height
UVM cis rs2564921 1 rs2581786 chr3:53126143 RFT1 chr3:53122503-53164470:- -0.37 -5.34 1.82E-6 Height
UVM cis rs2564921 1 rs2581787 chr3:53127677 RFT1 chr3:53122503-53164470:- -0.37 -5.34 1.82E-6 Height
UVM cis rs2564921 1 rs2581800 chr3:53109352 RFT1 chr3:53122503-53164470:- -0.36 -5.19 3.18E-6 Height
UVM cis rs2739330 1 rs2739330 chr22:24295286 GSTT1 chr22:24376141-24384284:- 1 8.35 2.36E-11 Liver enzyme levels (gamma-glutamyl transferase)
UVM cis rs2739330 1 rs2739330 chr22:24295286 GSTT2 chr22:24322314-24326104:+;chr22 -0.97 -7.16 2.08E-9 Liver enzyme levels (gamma-glutamyl transferase)